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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
43
DNA accessibility
32
DNA binding
7
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
31
June, 2019
6
February, 2021
4
July, 2019
3
February, 2020
3
May, 2019
Available data
78
bam
57
bed narrowPeak
55
bigWig
49
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
Organism
86
Homo sapiens
Biosample type
86
tissue
Organ
741
liver
740
pancreas
619
connective tissue
464
adipose tissue
343
epithelium
321
heart
313
kidney
211
brain
187
vasculature
183
blood vessel
127
artery
86
limb
75
bone element
69
blood
69
bodily fluid
65
musculature of body
60
eye
27
embryo
27
nerve
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
86
AMP
Genome assembly (visualization)
61
hg19
60
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
86 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
12
3
tibial artery
2
9
1
1
gastrocnemius medialis
1
4
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