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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
32
ChIP-seq
17
pCHi-C
6
Hi-C
2
DNase-seq
Assay category
182
Transcription
180
DNA accessibility
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
93
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
40
February, 2021
34
May, 2021
12
August, 2017
11
October, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
609
bam
402
fastq
295
bed narrowPeak
264
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
417
Homo sapiens
Biosample type
983
tissue
417
primary cell
140
cell line
135
in vitro differentiated cells
7
stem cell
Organ
122
epithelium
107
pancreas
8
blood
8
bodily fluid
7
blood vessel
7
vasculature
7
vein
6
connective tissue
5
kidney
2
heart
2
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
267
HPAP
125
AMP
24
T1D
1
ITG
Genome assembly (visualization)
22
hg19
17
GRCh38
Lab
267
Klaus Kaestner, Upenn
125
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
14
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bigWig
BIOSAMPLE
ASSAY
417 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
Hi-C
DNase-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
1
exocrine cell
39
pancreatic beta cell
13
11
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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