Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
18
ATAC-seq
12
single cell RNA-seq
5
ChIP-seq
Assay category
45
DNA accessibility
12
Transcription
DNA methylation
5
DNA binding
Target of assay
5
transcription factor
Date released
382
November, 2017
300
August, 2017
210
June, 2019
189
October, 2019
141
February, 2023
133
May, 2021
106
August, 2021
97
May, 2019
94
December, 2017
81
November, 2018
74
October, 2018
73
September, 2018
65
April, 2019
62
February, 2021
50
July, 2018
44
April, 2018
44
May, 2022
41
September, 2020
40
May, 2024
39
February, 2018
37
November, 2019
35
December, 2018
30
January, 2019
27
May, 2020
17
October, 2017
11
September, 2017
7
August, 2020
7
July, 2019
5
January, 2018
4
August, 2018
3
June, 2018
3
March, 2020
2
November, 2020
1
March, 2019
Available data
572
bam
553
tsv
551
bigWig
89
txt
39
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
62
Homo sapiens
Biosample type
40
primary cell
14
cell line
8
tissue
Organ
12
artery
12
blood vessel
12
heart
12
vasculature
8
bone element
8
skeleton
6
limb
1
connective tissue
1
liver
Project
39
HPAP
23
AMP
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
39
Klaus Kaestner, Upenn
23
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
62 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
primary cell
Langerhans cell
27
12
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
4
HepG2
1
iPSC derived cell line
1
tissue
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
+ See 3 more…
See all biosamples
Download