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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
6
ChIP-seq
Assay category
16
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
14
June, 2019
4
November, 2017
4
October, 2019
Available data
317
bam
301
bigWig
251
fastq
151
bed narrowPeak
150
tsv
76
bigBed narrowPeak
39
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
22
Homo sapiens
Biosample type
22
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
22
AMP
Genome assembly (visualization)
20
GRCh38
16
hg19
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
22 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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