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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
DNase-seq
4
ChIP-seq
Assay category
23
DNA accessibility
4
DNA binding
Target of assay
52
histone
histone modification
36
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
23
June, 2019
2
November, 2017
2
November, 2018
Available data
331
fastq
318
bam
192
tsv
157
txt
131
bed narrowPeak
112
zippedFastqFolder
66
tagAlign
64
xls
49
bigWig
27
bigBed narrowPeak
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
27
Homo sapiens
Biosample type
16
tissue
7
primary cell
4
cell line
Organ
10
brain
7
kidney
6
epithelium
4
liver
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
vasculature
Project
27
AMP
Genome assembly (visualization)
hg19
608
GRCh38
Lab
27
AMP-T2D consortium
assay_slims!
DNA methylation
assembly!
hg19
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
27 results
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DNase-seq
ChIP-seq
tissue
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 9 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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