Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
ATAC-seq
18
ChIP-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
36
August, 2021
20
May, 2022
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
57
Homo sapiens
Biosample type
34
cell line
23
tissue
Organ
51
liver
3
pancreas
2
kidney
Project
57
AMP
Genome assembly (visualization)
16
hg19
Lab
3519
AMP-T2D consortium
309
Kyle Gaulton, UCSD
228
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
liver
20
islet of Langerhans
1
2
Download