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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
18
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
Assay category
32
DNA accessibility
18
Transcription
5
DNA binding
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
7
June, 2019
February, 2020
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
Organism
59
Homo sapiens
Biosample type
55
tissue
4
primary cell
Organ
829
pancreas
743
liver
675
connective tissue
483
adipose tissue
432
epithelium
380
heart
350
kidney
272
brain
230
vasculature
225
blood vessel
159
bone element
139
artery
118
limb
86
musculature of body
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
33
hg19
6
GRCh38
Lab
59
AMP-T2D consortium
assay_slims!
DNA methylation
month_released!
February, 2020
May, 2022
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
2
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
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