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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
39
DNA binding
34
DNA accessibility
6
3D chromatin structure
DNA methylation
6
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
February, 2020
May, 2022
1
January, 2018
Available data
67
bigWig
60
bed narrowPeak
56
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
2
bedpe bed3+
2
hic
Organism
86
Homo sapiens
Biosample type
73
tissue
13
primary cell
Organ
829
pancreas
743
liver
675
connective tissue
483
adipose tissue
432
epithelium
380
heart
350
kidney
272
brain
230
vasculature
225
blood vessel
159
bone element
139
artery
118
limb
86
musculature of body
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
69
hg19
52
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_slims!
DNA methylation
month_released!
February, 2020
May, 2022
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
tissue
skeletal muscle tissue
22
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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