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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
139
Homo sapiens
Biosample type
71
tissue
66
cell line
2
primary cell
Organ
892
pancreas
783
liver
675
connective tissue
483
adipose tissue
471
epithelium
380
heart
350
kidney
272
brain
230
vasculature
225
blood vessel
159
bone element
139
artery
118
limb
musculature of body
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
139
AMP-T2D consortium
assay_slims!
DNA methylation
month_released!
February, 2020
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
2
tibial artery
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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