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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
132
total RNA-seq
38
ATAC-seq
4
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
198
DNA binding
134
Transcription
39
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
253
bigWig
141
fastq
130
bed narrowPeak
125
tsv
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
378
Homo sapiens
Biosample type
2457
tissue
995
primary cell
620
cell line
378
in vitro differentiated cells
6
stem cell
Organ
95
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
378
AMP
Genome assembly (visualization)
283
hg19
259
GRCh38
4
hg18
Lab
324
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA methylation
month_released!
March, 2020
October, 2019
organ_slims!
skin of body
BIOSAMPLE
ASSAY
378 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
6
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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