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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
905
ChIP-seq
257
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
16
small RNA-seq
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
905
DNA binding
467
DNA accessibility
DNA methylation
9
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
270
August, 2017
241
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1881
bam
1745
bigWig
1048
tsv
982
bed narrowPeak
561
bigBed narrowPeak
364
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2689
Homo sapiens
Biosample type
2698
tissue
1029
primary cell
650
cell line
386
in vitro differentiated cells
6
stem cell
Organ
540
connective tissue
490
pancreas
481
adipose tissue
353
liver
298
kidney
297
heart
262
brain
158
bone element
128
blood vessel
128
vasculature
121
limb
73
artery
72
musculature of body
56
eye
43
nerve
22
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
skin of body
1
spinal cord
1
thymus
Project
2605
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1834
GRCh38
1728
hg19
Lab
2346
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
month_released!
March, 2020
organ_slims!
skin of body
BIOSAMPLE
ASSAY
2698 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
296
69
65
1
7
3
4
1
4
adipose tissue
382
2
3
liver
166
145
20
2
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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