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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
322
ChIP-seq
Assay category
322
DNA binding
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
129
October, 2019
50
August, 2017
33
May, 2019
28
November, 2017
27
May, 2020
23
April, 2019
15
May, 2024
11
October, 2018
2
December, 2017
2
January, 2019
March, 2020
2
October, 2017
Available data
266
bigWig
264
bed narrowPeak
241
bam
110
tagAlign
108
bigBed narrowPeak
28
fastq
15
bed broadPeak
6
bed bed3+
1
tagAlign bed3+
Organism
320
Homo sapiens
Biosample type
322
tissue
115
primary cell
55
in vitro differentiated cells
18
cell line
1
stem cell
Organ
114
brain
44
liver
38
heart
30
pancreas
18
blood vessel
18
vasculature
15
limb
13
connective tissue
12
adipose tissue
10
kidney
9
musculature of body
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
lymph node
1
pituitary gland
Project
322
AMP
Genome assembly (visualization)
249
GRCh38
237
hg19
Lab
307
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA methylation
month_released!
March, 2020
BIOSAMPLE
ASSAY
322 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
35
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
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