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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
10
ATAC-seq
9
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
DNA methylation
12
DNA accessibility
9
3D chromatin structure
Target of assay
3
control
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
77
bigWig
74
bam
65
tsv
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
86
Homo sapiens
Biosample type
64
tissue
22
primary cell
Organ
17
connective tissue
16
brain
15
heart
12
adipose tissue
9
blood vessel
9
pancreas
9
vasculature
8
liver
8
musculature of body
7
epithelium
7
kidney
4
limb
3
artery
1
pericardium
Project
86
AMP
Genome assembly (visualization)
79
hg19
73
GRCh38
Lab
81
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
4
1
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 19 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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