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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
37
single cell RNA-seq
26
total RNA-seq
snATAC-seq
1
pCHi-C
Assay category
77
DNA accessibility
63
Transcription
DNA methylation
Date released
682
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
168
July, 2018
137
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
Available data
72
zippedFastqFolder
38
bed narrowPeak
28
fastq
27
bam
23
bigWig
6
txt
3
tsv
1
bedpe bed3+
Organism
141
Homo sapiens
Biosample type
75
primary cell
65
tissue
1
in vitro differentiated cells
Organ
66
pancreas
42
epithelium
40
liver
1
adipose tissue
1
connective tissue
1
musculature of body
Project
72
HPAP
69
AMP
Genome assembly (visualization)
41
hg19
3
GRCh38
Lab
72
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
5
AMP-T2D consortium
assay_slims!
DNA methylation
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
pCHi-C
primary cell
Langerhans cell
33
pancreatic alpha cell
22
2
pancreatic beta cell
13
pancreatic acinar cell
4
1
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
in vitro differentiated cells
white fat cell
1
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