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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ATAC-seq
34
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
1
pCHi-C
Assay category
60
DNA accessibility
60
Transcription
DNA methylation
Date released
259
August, 2021
160
February, 2023
135
February, 2021
125
November, 2017
124
August, 2017
120
May, 2022
97
October, 2019
82
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2018
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
July, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
93
zippedFastqFolder
7
fastq
6
bam
6
txt
1
bedpe bed3+
Organism
121
Homo sapiens
Biosample type
93
primary cell
27
tissue
1
in vitro differentiated cells
Organ
45
pancreas
39
epithelium
20
liver
1
adipose tissue
1
connective tissue
1
musculature of body
Project
93
HPAP
28
AMP
Genome assembly (visualization)
hg19
3
GRCh38
Lab
93
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
2
AMP-T2D consortium
assay_slims!
DNA methylation
assembly!
hg19
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
white fat cell
1
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