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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
34
ChIP-seq
26
total RNA-seq
1
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA accessibility
34
DNA binding
27
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
338
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
80
April, 2019
80
November, 2018
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
59
July, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
68
bed narrowPeak
59
fastq
58
bam
50
bigWig
30
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
101
Homo sapiens
Biosample type
primary cell
73
tissue
28
cell line
Organ
41
liver
27
blood
27
bodily fluid
24
pancreas
7
spleen
2
musculature of body
Project
101
AMP
Genome assembly (visualization)
69
hg19
30
GRCh38
Lab
40
Karen Mohlke, UNC
37
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
assay_slims!
DNA methylation
biosample_type!
primary cell
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
cell line
GM12878
27
HepG2
1
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