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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
37
single cell RNA-seq
34
ChIP-seq
31
total RNA-seq
22
snATAC-seq
2
RNA microarray
1
Hi-C
Assay category
99
DNA accessibility
68
Transcription
DNA methylation
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
zippedFastqFolder
68
bed narrowPeak
63
bam
59
fastq
55
bigWig
30
bigBed narrowPeak
9
tsv
7
txt
1
bed bed3+
Organism
204
Homo sapiens
Biosample type
98
primary cell
76
tissue
28
cell line
2
in vitro differentiated cells
Organ
63
pancreas
46
liver
45
epithelium
27
blood
27
bodily fluid
7
spleen
3
kidney
2
musculature of body
Project
111
AMP
93
HPAP
Genome assembly (visualization)
74
hg19
35
GRCh38
Lab
93
Klaus Kaestner, Upenn
47
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
5
audit script error
2
inconsistent ontology term
1
inconsistent control
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
204 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
RNA microarray
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
hepatocyte
5
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
kidney
1
+ See 2 more…
cell line
GM12878
27
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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