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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
571
total RNA-seq
99
ATAC-seq
84
RNA microarray
52
single cell RNA-seq
49
snATAC-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
623
Transcription
148
DNA accessibility
DNA methylation
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
596
bam
571
bigWig
553
tsv
96
txt
93
zippedFastqFolder
63
fastq
61
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
Organism
868
Homo sapiens
Biosample type
611
tissue
135
primary cell
96
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
89
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
65
epithelium
43
liver
8
kidney
8
skeleton
6
limb
2
musculature of body
Project
736
AMP
132
HPAP
Genome assembly (visualization)
613
hg19
568
GRCh38
Lab
672
AMP-T2D consortium
132
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
128
inconsistent ontology term
33
audit script error
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
868 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
liver
20
20
1
islet of Langerhans
6
18
+ See 15 more…
primary cell
Langerhans cell
45
48
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
osteoblast
1
1
1
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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