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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
104
DNA binding
10
DNA accessibility
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
92
transcription factor
23
RNA binding protein
16
recombinant protein
10
control
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
116
fastq
114
bam
103
bed narrowPeak
103
bigBed narrowPeak
103
bigWig
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
116
Homo sapiens
Biosample type
88
cell line
27
tissue
1
primary cell
Organ
53
liver
42
blood
42
bodily fluid
14
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
116
AMP
Genome assembly (visualization)
102
GRCh38
101
hg19
Lab
116
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
GM12878
42
tissue
spleen
13
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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