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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ATAC-seq
204
DNase-seq
65
snATAC-seq
3
FAIRE-seq
Assay category
1593
DNA binding
1439
Transcription
650
DNA accessibility
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
183
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
49
February, 2021
42
May, 2022
29
October, 2019
18
May, 2021
11
May, 2023
10
April, 2020
8
July, 2019
7
November, 2018
6
August, 2017
6
November, 2019
3
October, 2017
2
January, 2018
2
November, 2020
Available data
418
bed narrowPeak
314
bam
298
bigWig
209
bigBed narrowPeak
202
bed bed3+
199
bed broadPeak
199
bigBed broadPeak
64
xls
41
fastq
21
zippedFastqFolder
12
bed bed3
12
tsv
7
bed bedgraph
4
txt
1
tar
Organism
649
Homo sapiens
Biosample type
388
tissue
209
primary cell
43
in vitro differentiated cells
10
cell line
Organ
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
592
AMP
48
HPAP
10
LungMap
Genome assembly (visualization)
374
GRCh38
373
hg19
Lab
481
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
28
audit script error
27
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA methylation
organ_slims!
blood
pancreas
BIOSAMPLE
ASSAY
650 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 58 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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