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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
20
DNase-seq
6
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
26
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
23
October, 2018
19
June, 2019
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
458
bam
441
bigWig
401
tsv
41
fastq
31
bed narrowPeak
28
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
20
bigBed broadPeak
8
tagAlign
1
bedpe bed3+
Organism
502
Homo sapiens
Biosample type
500
tissue
2
primary cell
1
in vitro differentiated cells
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
503
AMP
Genome assembly (visualization)
444
hg19
440
GRCh38
Lab
503
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
organ_slims!
blood
BIOSAMPLE
ASSAY
503 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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