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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
865
ChIP-seq
232
ATAC-seq
175
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
21
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1208
Transcription
865
DNA binding
439
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
270
August, 2017
229
August, 2021
221
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
64
February, 2023
59
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
24
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1887
bam
1713
bigWig
1071
tsv
914
bed narrowPeak
558
bigBed narrowPeak
364
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2634
Homo sapiens
Biosample type
2643
tissue
1026
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
499
pancreas
482
adipose tissue
356
liver
298
kidney
264
brain
264
heart
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2546
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1800
GRCh38
1716
hg19
Lab
2331
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
organ_slims!
eye
BIOSAMPLE
ASSAY
2643 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
69
67
1
7
3
1
4
adipose tissue
382
2
3
1
liver
167
145
20
2
1
1
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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