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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
19
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
430
Transcription
276
DNA accessibility
264
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
48
July, 2018
43
April, 2018
42
February, 2021
42
June, 2019
23
October, 2019
18
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
585
bigWig
578
bam
402
fastq
273
bed narrowPeak
258
tsv
112
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
997
Homo sapiens
Biosample type
2401
tissue
997
primary cell
642
cell line
394
in vitro differentiated cells
10
stem cell
Organ
353
epithelium
299
pancreas
38
connective tissue
36
vasculature
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
515
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
596
hg19
508
GRCh38
Lab
480
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
organ_slims!
kidney
BIOSAMPLE
ASSAY
997 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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