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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
30
DNase-seq
17
pCHi-C
10
Hi-C
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
287
DNA accessibility
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
93
May, 2022
88
February, 2023
84
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
42
February, 2021
41
September, 2018
23
June, 2019
20
July, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
364
bam
363
bigWig
308
fastq
262
tsv
112
zippedFastqFolder
68
bed narrowPeak
51
bigBed narrowPeak
33
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
748
Homo sapiens
Biosample type
1784
tissue
748
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
261
epithelium
229
pancreas
26
connective tissue
18
kidney
13
vasculature
11
blood vessel
11
brain
9
liver
8
blood
8
bodily fluid
7
heart
5
vein
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
350
AMP
277
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
368
hg19
326
GRCh38
Lab
348
AMP-T2D consortium
277
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
assay_slims!
DNA methylation
DNA binding
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
748 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
small RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
1
monocyte
54
15
1
pancreatic beta cell
21
23
12
1
exocrine cell
39
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