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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
92
total RNA-seq
58
snATAC-seq
49
ATAC-seq
3
Hi-C
Assay category
186
Transcription
107
DNA accessibility
DNA methylation
3
3D chromatin structure
Date released
93
May, 2022
76
February, 2023
59
September, 2020
39
February, 2021
19
April, 2020
7
August, 2020
3
October, 2022
Available data
163
fastq
112
zippedFastqFolder
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
295
Homo sapiens
Biosample type
277
primary cell
19
tissue
Organ
105
epithelium
105
pancreas
19
lung
Project
277
HPAP
19
LungMap
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3772
AMP-T2D consortium
343
Kyle Gaulton, UCSD
277
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_slims!
DNA methylation
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
296 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
4
1
tissue
lung
9
10
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