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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
pCHi-C
1
DNase-seq
Assay category
62
Transcription
20
DNA binding
14
DNA accessibility
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
8
February, 2023
7
December, 2018
7
January, 2019
7
November, 2018
1
March, 2020
1
May, 2021
1
October, 2017
Available data
88
bam
88
txt
72
bigWig
59
tsv
22
bed narrowPeak
22
fastq
13
bigBed narrowPeak
4
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
182
Homo sapiens
Biosample type
181
tissue
1
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
350
kidney
343
heart
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
181
AMP
1
T1D
Genome assembly (visualization)
84
hg19
80
GRCh38
Lab
181
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
182 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
20
1
1
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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