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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
113
bam
92
bed narrowPeak
90
bigWig
84
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
864
pancreas
771
liver
650
connective tissue
479
adipose tissue
450
epithelium
313
heart
272
kidney
249
brain
220
vasculature
217
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
56
musculature of body
41
nerve
34
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
assay_slims!
DNA methylation
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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