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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
9
Transcription
6
3D chromatin structure
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
22
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
26
bigWig
19
bed narrowPeak
15
tagAlign
13
bam
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
Organism
47
Homo sapiens
Biosample type
45
tissue
2
primary cell
Organ
889
pancreas
782
liver
659
connective tissue
484
adipose tissue
451
epithelium
348
heart
269
kidney
254
brain
226
vasculature
223
blood vessel
bone element
139
artery
89
limb
69
blood
69
bodily fluid
53
eye
47
musculature of body
43
nerve
37
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
29
hg19
11
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA methylation
month_released!
June, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
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