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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
Assay category
50
DNA binding
Target of assay
31
histone
31
histone modification
25
transcription factor
16
narrow histone mark
15
broad histone mark
13
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
16
November, 2017
11
December, 2017
4
November, 2018
2
February, 2018
1
October, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
25
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
50
Homo sapiens
Biosample type
20
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
21
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
50
AMP
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
50
inconsistent control read length
6
inconsistent control run_type
4
inconsistent assembly
assay_slims!
DNA methylation
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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