Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
140
ChIP-seq
56
snATAC-seq
28
DNase-seq
16
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
425
Transcription
273
DNA accessibility
140
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
139
May, 2020
138
May, 2021
93
May, 2022
82
February, 2023
59
September, 2020
56
September, 2018
43
April, 2018
42
August, 2017
42
February, 2021
42
July, 2018
30
June, 2019
22
July, 2019
20
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
October, 2022
2
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
472
bam
465
bigWig
362
fastq
247
tsv
166
bed narrowPeak
112
zippedFastqFolder
73
bigBed narrowPeak
49
tagAlign
38
bed broadPeak
38
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
864
Homo sapiens
Biosample type
2345
tissue
864
primary cell
556
cell line
223
in vitro differentiated cells
8
stem cell
Organ
313
epithelium
267
pancreas
26
connective tissue
26
vasculature
22
blood vessel
21
kidney
20
brain
13
vein
11
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
431
AMP
277
HPAP
155
T1D
1
ITG
Genome assembly (visualization)
468
hg19
412
GRCh38
Lab
416
AMP-T2D consortium
277
Klaus Kaestner, Upenn
170
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
864 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
54
15
41
1
pancreatic alpha cell
52
35
12
10
1
pancreatic beta cell
21
23
12
10
1
exocrine cell
39
+ See 83 more…
See all biosamples
Download