Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
117
ChIP-seq
102
single cell RNA-seq
59
total RNA-seq
31
DNase-seq
6
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
163
Transcription
117
DNA binding
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
56
September, 2018
48
July, 2018
47
June, 2019
43
April, 2018
42
August, 2017
32
May, 2021
22
July, 2019
22
October, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
May, 2019
2
October, 2018
1
March, 2020
1
November, 2018
Available data
373
bam
349
bigWig
206
fastq
168
tsv
143
bed narrowPeak
88
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
9
tagAlign
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
470
Homo sapiens
Biosample type
2339
tissue
631
cell line
470
primary cell
338
in vitro differentiated cells
7
stem cell
Organ
217
epithelium
167
pancreas
33
connective tissue
28
kidney
27
vasculature
22
blood vessel
20
brain
13
vein
12
heart
12
liver
9
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
470
AMP
277
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
361
hg19
293
GRCh38
Lab
455
AMP-T2D consortium
15
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
1
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
470 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
10
12
10
pancreatic alpha cell
6
10
12
10
pancreatic acinar cell
5
4
12
4
pancreatic ductal cell
4
7
10
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
+ See 83 more…
See all biosamples
Download