Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
114
DNA binding
69
DNA accessibility
Target of assay
216
histone
216
histone modification
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
63
May, 2021
39
June, 2019
29
September, 2018
21
August, 2017
13
October, 2019
6
November, 2017
5
September, 2017
2
August, 2021
2
May, 2019
2
November, 2020
1
February, 2021
Available data
509
bam
495
bigWig
369
fastq
264
tsv
183
bed narrowPeak
112
zippedFastqFolder
88
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
183
Homo sapiens
Biosample type
731
tissue
387
cell line
183
primary cell
95
in vitro differentiated cells
1
stem cell
Organ
79
epithelium
45
pancreas
17
kidney
16
vasculature
13
connective tissue
12
blood vessel
11
brain
8
vein
6
heart
5
liver
5
musculature of body
3
eye
Project
143
AMP
40
T1D
Genome assembly (visualization)
176
hg19
169
GRCh38
Lab
133
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
40
13
pancreatic beta cell
4
7
pancreatic ductal cell
7
4
CD8-positive, alpha-beta T cell
10
pancreatic alpha cell
4
6
+ See 29 more…
See all biosamples
Download