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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
510
DNA binding
29
DNA accessibility
DNA methylation
4
3D chromatin structure
4
Transcription
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
53
December, 2017
52
November, 2018
51
May, 2020
31
August, 2017
24
August, 2021
20
May, 2022
4
July, 2019
3
February, 2021
3
October, 2019
2
June, 2019
2
March, 2020
1
December, 2018
Available data
492
bam
432
bigWig
432
fastq
412
bed narrowPeak
337
bigBed narrowPeak
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
5
tsv
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
553
Homo sapiens
Biosample type
377
cell line
161
tissue
8
in vitro differentiated cells
7
primary cell
Organ
553
liver
412
pancreas
296
epithelium
275
kidney
254
heart
197
brain
159
connective tissue
127
vasculature
122
blood vessel
97
bone element
80
limb
71
artery
69
blood
69
bodily fluid
67
adipose tissue
64
musculature of body
41
eye
22
nerve
20
lung
19
embryo
19
spleen
18
ureter
13
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
553
AMP
Genome assembly (visualization)
434
hg19
343
GRCh38
Lab
512
AMP-T2D consortium
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
553 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
1
2
2
2
1
tissue
liver
123
20
2
1
1
1
1
right lobe of liver
7
1
2
2
in vitro differentiated cells
hepatocyte
8
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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