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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
9
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
10
August, 2017
8
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
51
bigWig
48
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
2
bedpe bed3+
2
hic
1
txt
Organism
70
Homo sapiens
Biosample type
61
tissue
9
primary cell
Organ
815
pancreas
742
liver
633
connective tissue
465
adipose tissue
427
epithelium
335
kidney
326
heart
214
brain
188
vasculature
183
blood vessel
159
bone element
127
artery
87
limb
70
musculature of body
69
blood
69
bodily fluid
60
eye
33
embryo
nerve
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
54
hg19
44
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
organ_slims!
nerve
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
3
skeletal muscle tissue
10
1
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
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