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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
1
DNase-seq
1
small RNA-seq
1
total RNA-seq
Assay category
6
DNA binding
2
Transcription
1
DNA accessibility
DNA methylation
Target of assay
8
histone
8
histone modification
broad histone mark
4
narrow histone mark
2
control
Date released
7
June, 2019
2
July, 2019
Available data
9
bam
7
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
9
Homo sapiens
Biosample type
tissue
9
primary cell
Organ
412
epithelium
411
liver
357
pancreas
112
connective tissue
93
vasculature
88
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
47
kidney
33
embryo
20
brain
13
vein
9
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
9
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
9
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
organ_slims!
nerve
biosample_type!
tissue
BIOSAMPLE
ASSAY
9 results
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ChIP-seq
DNase-seq
small RNA-seq
total RNA-seq
primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
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