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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
Assay category
375
DNA binding
Target of assay
770
histone modification
769
histone
469
transcription factor
393
narrow histone mark
375
broad histone mark
308
control
101
RNA binding protein
88
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
92
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
8
August, 2021
8
February, 2018
7
October, 2017
6
November, 2019
4
January, 2019
Available data
306
bed narrowPeak
306
bigWig
275
bam
219
bigBed narrowPeak
93
tagAlign
81
fastq
27
bed broadPeak
10
bed bed3+
8
bigBed broadPeak
Organism
371
Homo sapiens
Biosample type
299
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
67
brain
57
heart
50
pancreas
41
liver
40
connective tissue
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
375
AMP
Genome assembly (visualization)
293
GRCh38
250
hg19
Lab
344
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
biosample_type!
primary cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
375 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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