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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
2
Capture-C
2
DNase-seq
1
MPRA
1
WGBS
Assay category
484
DNA binding
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
26
August, 2021
26
October, 2019
18
February, 2021
18
January, 2019
17
May, 2021
15
November, 2019
7
March, 2020
February, 2023
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
478
bam
422
fastq
418
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
Organism
539
Homo sapiens
Biosample type
1469
tissue
640
primary cell
540
cell line
244
in vitro differentiated cells
8
stem cell
Organ
386
liver
61
blood
61
bodily fluid
58
pancreas
44
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
538
AMP
2
T1D
Genome assembly (visualization)
426
hg19
360
GRCh38
Lab
510
AMP-T2D consortium
24
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
56
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA sequencing
Transcription
month_released!
February, 2023
BIOSAMPLE
ASSAY
540 results
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ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
Capture-C
DNase-seq
MPRA
WGBS
cell line
HepG2
378
1
2
2
2
1
GM12878
60
1
EndoC_BH1
15
19
6
1
2
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
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