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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
Assay category
Transcription
82
DNA accessibility
43
DNA binding
3
3D chromatin structure
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
138
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
106
bed narrowPeak
64
xls
34
bam
32
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
Organism
137
Homo sapiens
Biosample type
73
tissue
35
in vitro differentiated cells
26
cell line
4
primary cell
Organ
73
kidney
25
liver
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
138
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
71
Katalin Susztak, Upenn
38
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA sequencing
Transcription
BIOSAMPLE
ASSAY
138 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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