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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1472
total RNA-seq
485
ATAC-seq
357
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
73
DNA methylation
18
Transcription
Date released
41
May, 2022
28
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
34
bam
34
bigWig
24
tsv
17
fastq
16
bed bedMethyl
16
bigBed bedMethyl
Organism
91
Homo sapiens
Biosample type
49
primary cell
41
tissue
1
cell line
Organ
53
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
HPAP
44
AMP
Genome assembly (visualization)
34
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
44
AMP-T2D consortium
assay_slims!
DNA sequencing
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
91 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 17 more…
cell line
HepG2
1
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