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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
355
single cell RNA-seq
208
DNase-seq
75
WGBS
55
snATAC-seq
48
pCHi-C
25
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
25
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
August, 2021
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
14
hic
12
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
bedpe
1
fastq
Organism
25
Homo sapiens
Biosample type
16
tissue
6
primary cell
3
cell line
Organ
6
musculature of body
5
pancreas
4
blood vessel
4
limb
4
liver
4
vasculature
3
brain
3
epithelium
3
heart
1
connective tissue
1
kidney
1
vein
Project
24
AMP
1
ITG
Genome assembly (visualization)
18
hg19
2
GRCh38
Lab
20
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA sequencing
audit.ERROR.category!
inconsistent ontology term
audit script error
BIOSAMPLE
ASSAY
25 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
2
Panc1
1
See all biosamples
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