Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
2
DNase-seq
1
Hi-C
1
total RNA-seq
Assay category
13
DNA binding
2
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
7
histone
7
histone modification
6
control
4
broad histone mark
3
narrow histone mark
Date released
315
November, 2017
70
February, 2021
61
November, 2018
40
August, 2021
28
December, 2018
23
January, 2019
17
October, 2019
6
February, 2023
4
March, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
16
bam
10
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
tsv
Organism
17
Homo sapiens
Biosample type
240
tissue
32
primary cell
17
cell line
2
in vitro differentiated cells
Organ
15
pancreas
2
epithelium
2
kidney
Project
17
AMP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
17
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA sequencing
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
17 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
cell line
Panc1
13
1
1
glomerular visceral epithelial cell
1
1
Download