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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
2
July, 2019
Available data
29
bam
10
tsv
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
fastq
2
hdf5
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
38
Homo sapiens
Biosample type
28
tissue
8
primary cell
2
cell line
Organ
293
pancreas
221
epithelium
165
liver
126
heart
110
connective tissue
86
kidney
64
adipose tissue
61
brain
55
eye
38
vasculature
37
blood vessel
27
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
7
embryo
7
vein
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
GRCh38
12
hg19
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA sequencing
files.file_type!
txt
bigWig
assembly!
GRCh38
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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