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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
ATAC-seq
2
Capture-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
5
3D chromatin structure
2
Transcription
1
DNA accessibility
Date released
4
July, 2019
2
August, 2021
2
May, 2021
1
February, 2021
1
May, 2022
1
October, 2019
Available data
bam
3033
bigWig
1586
tsv
1539
bed narrowPeak
1297
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
11
Homo sapiens
Biosample type
6
primary cell
2
cell line
2
in vitro differentiated cells
1
tissue
Organ
3
brain
3
connective tissue
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
1
pancreas
Project
11
AMP
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA sequencing
files.file_type!
bam
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
11 results
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Clear Filters
Hi-C
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
tissue
skeletal muscle tissue
1
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