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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
6
ATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
Assay category
18
DNA binding
10
Transcription
6
DNA accessibility
3
3D chromatin structure
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
39
August, 2021
3
February, 2023
2
March, 2019
Available data
19
bigWig
18
bed narrowPeak
10
tsv
3
bed bedgraph
3
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
Organism
44
Homo sapiens
Biosample type
33
cell line
7
in vitro differentiated cells
4
tissue
Organ
30
liver
4
connective tissue
4
pancreas
2
kidney
Project
44
AMP
Genome assembly (visualization)
24
hg19
1
GRCh38
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Hi-C
Capture-C
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
1
1
2
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