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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
14
total RNA-seq
13
ATAC-seq
4
pCHi-C
2
DNase-seq
2
Hi-C
Assay category
63
DNA binding
15
DNA accessibility
14
Transcription
2
3D chromatin structure
Target of assay
36
control
27
histone
27
histone modification
24
narrow histone mark
3
broad histone mark
Date released
268
August, 2021
192
February, 2023
180
May, 2022
139
August, 2017
98
October, 2019
81
May, 2020
80
February, 2021
79
May, 2021
72
November, 2017
56
September, 2020
47
September, 2023
34
March, 2020
29
October, 2018
24
February, 2020
22
May, 2019
21
July, 2019
20
December, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
5
November, 2020
4
January, 2019
4
July, 2018
4
June, 2019
4
October, 2022
3
December, 2019
1
August, 2018
1
August, 2022
1
September, 2018
Available data
229
bam
bigWig
176
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
11
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
98
Homo sapiens
Biosample type
82
tissue
9
primary cell
7
cell line
Organ
21
eye
17
limb
11
blood vessel
11
nerve
11
vasculature
10
brain
10
pancreas
9
epithelium
6
vein
5
artery
5
kidney
4
gonad
4
ovary
1
connective tissue
1
heart
1
lymph node
1
pituitary gland
1
skin of body
Project
98
AMP
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_slims!
DNA sequencing
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
11
tibial artery
5
kidney
2
central medial thalamic nucleus
1
+ See 11 more…
primary cell
endothelial cell of umbilical vein
5
1
epithelial cell of proximal tubule
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
7
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