Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
total RNA-seq
13
ChIP-seq
6
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
16
Transcription
13
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
broad histone mark
3
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
19
fastq
14
bam
11
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
37
Homo sapiens
Biosample type
19
primary cell
15
cell line
3
tissue
Organ
86
brain
69
limb
54
epithelium
47
blood vessel
47
vasculature
42
nerve
37
pancreas
30
kidney
26
artery
21
eye
21
vein
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
19
HPAP
18
AMP
Genome assembly (visualization)
11
GRCh38
8
hg19
Lab
19
Klaus Kaestner, Upenn
18
AMP-T2D consortium
Audit category:
1
inconsistent assembly
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
37 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
primary cell
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
cell line
Panc1
13
1
1
tissue
islet of Langerhans
3
Download