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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
56
Transcription
51
DNA binding
3
DNA accessibility
Target of assay
31
transcription factor
13
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
276
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
92
fastq
51
bam
41
bigWig
38
bed narrowPeak
36
bigBed narrowPeak
19
zippedFastqFolder
3
bed bed3+
Organism
110
Homo sapiens
Biosample type
59
primary cell
48
tissue
in vitro differentiated cells
3
stem cell
Organ
48
liver
19
epithelium
19
pancreas
Project
59
HPAP
51
AMP
Genome assembly (visualization)
42
GRCh38
39
hg19
Lab
59
Klaus Kaestner, Upenn
51
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
2
inconsistent control read length
assay_slims!
DNA sequencing
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
110 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
liver
38
right lobe of liver
10
stem cell
hESC
3
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