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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
60
February, 2021
36
February, 2023
27
June, 2019
22
July, 2019
7
March, 2020
3
February, 2020
3
October, 2019
2
May, 2021
Available data
165
tsv
112
bam
104
bigWig
74
bed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
27
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
252
Homo sapiens
Biosample type
190
tissue
60
cell line
2
primary cell
Organ
728
pancreas
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
238
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
252
AMP-T2D consortium
assay_slims!
DNA sequencing
DNA binding
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
252 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
coronary artery
1
36
2
heart left ventricle
18
3
2
3
4
1
1
1
heart
1
4
18
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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