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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
23
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
48
DNA binding
46
DNA accessibility
Target of assay
39
histone
39
histone modification
22
narrow histone mark
17
broad histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
33
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
94
Homo sapiens
Biosample type
551
tissue
355
cell line
94
primary cell
14
in vitro differentiated cells
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
94
AMP
Genome assembly (visualization)
90
GRCh38
88
hg19
Lab
94
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA sequencing
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
pancreatic alpha cell
6
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