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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
4
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
31
DNA binding
8
DNA accessibility
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
195
June, 2019
97
May, 2019
72
November, 2018
67
October, 2019
64
April, 2019
50
December, 2017
40
October, 2018
39
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
Available data
215
fastq
211
bam
207
bigWig
96
bed narrowPeak
89
tsv
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
20
tissue
19
primary cell
Organ
17
pancreas
6
liver
connective tissue
3
epithelium
2
adipose tissue
Project
39
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA sequencing
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
12
liver
5
islet of Langerhans
1
1
right lobe of liver
1
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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